Not that this is your problem, but welding on auto body stuff usually involves welding out of position, usually vertical, or horizontal and occasionally overhead. ( no one seems to replace roof, trunk or hood panels for some reason... :laugh

Welding out of position is NOT the same as welding flat. I usually strongly suggest guys who want to do this set up their practice pieces exactly the way they are going to weld. Welding on flat is a great way to learn the basics or gun angle, stick out, travel speed etc with out all the complications welding out of position adds to the mix, but you still need to learn to weld out of position before jumping into a project like this if you want good results. Also I suggest guys set up practice pieces in real world positions after they learn to do out of position welds at the bench. Doing overhead welds are one things, doing them laying on your back with the gun jammed against the floor because you only have 16" to work is another manner entirely. A lot of time you end up laying on the floor to do welds on lower panels unless you have a lift to raise the car to a more comfortable level. Again once you learn the basics and are doing good consistent welds in a comfortable position, it's time to learn to do so under real world conditions.
The other thing I notice is guys don't really spend the time practicing on material similar to what they are going to weld. Learning the basics is easiest on material 14 ga to 1/8" on smaller machines as you don't burn thru as easily. However again, once you are doing nice consistent welds, you need to apply what you learned to thinner sheet before starting your project. Welding thin sheet has a whole new set of requirements, almost perfect fit up being one of the big ones. It's a lot better to go buy 3 or 4 scrap fenders at the junk yard and chop them up and mangle them, then it is to screw up the project car, I've seen plenty of minor repairs turn into major replacements because the project kept getting bigger and bigger as the guy kept screwing things up.
A sanding disk will be your friend. Grinding disks are too aggressive for thin sheet on average. Flap wheels or a rubber backed disk will remove rust/paint better while not removing as much material. You need to not only sand the area you want to weld, but your ground point as well. You need to go thru all the paint and putty and get down to shiny silver metal. Rust won't cut it. I'm not a big fan of magnetic ground clamps, but in some cases like body work, they make good sense, as long as you make sure you get a solid ground. Too many times the ground won't touch the steel well on irregular surfaces and you have to do something to adapt.